From 4e81aa4579dfb8fce27c5bfc1221e4cc76f22a60 Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Wed, 9 Sep 2026 13:17:56 +0000 Subject: [PATCH] Update all tools of usegalaxy.cz --- ..._detection_on_acoustic_recordings.yml.lock | 5 +++++ usegalaxy.cz/annotation.yml.lock | 1 + usegalaxy.cz/assembly.yml.lock | 1 + .../biodiversity_data_exploration.yml.lock | 8 ++++++++ usegalaxy.cz/climate_analysis.yml.lock | 1 + ...tors_for_satellite_remote_sensing.yml.lock | 7 +++++++ ...tors_for_turnover_boulders_fields.yml.lock | 2 ++ usegalaxy.cz/convert_formats.yml.lock | 2 ++ .../data_and_metadata_management.yml.lock | 2 ++ usegalaxy.cz/ecoregionalization.yml.lock | 5 +++++ usegalaxy.cz/genome_editing.yml.lock | 1 + usegalaxy.cz/get_data.yml.lock | 1 + usegalaxy.cz/gis_data_handling.yml.lock | 13 +++++++++++++ usegalaxy.cz/metagenomic_analysis.yml.lock | 5 +++++ usegalaxy.cz/nanopore.yml.lock | 1 + usegalaxy.cz/species_abundance.yml.lock | 19 +++++++++++++++++++ usegalaxy.cz/variant_calling.yml.lock | 2 ++ 17 files changed, 76 insertions(+) diff --git a/usegalaxy.cz/animal_detection_on_acoustic_recordings.yml.lock b/usegalaxy.cz/animal_detection_on_acoustic_recordings.yml.lock index 0d205e9..3abdbb3 100644 --- a/usegalaxy.cz/animal_detection_on_acoustic_recordings.yml.lock +++ b/usegalaxy.cz/animal_detection_on_acoustic_recordings.yml.lock @@ -5,6 +5,7 @@ tools: - name: spocc_occ owner: ecology revisions: + - 4546864dbc34 - f64b3c1a80a6 - f9d76a46799a tool_panel_section_id: animal_detection_on_acoustic_recordings @@ -13,23 +14,27 @@ tools: owner: ecology revisions: - 911f80dce38d + - 91f2603fc8d7 tool_panel_section_id: animal_detection_on_acoustic_recordings tool_panel_section_label: Animal Detection on Acoustic Recordings - name: vigiechiro_bilanenrichirp owner: ecology revisions: + - 4adb335be636 - 5ad79c210eb9 tool_panel_section_id: animal_detection_on_acoustic_recordings tool_panel_section_label: Animal Detection on Acoustic Recordings - name: vigiechiro_idcorrect_2ndlayer owner: ecology revisions: + - d4d6dc1385cd - f3fc8d243b1a tool_panel_section_id: animal_detection_on_acoustic_recordings tool_panel_section_label: Animal Detection on Acoustic Recordings - name: vigiechiro_idvalid owner: ecology revisions: + - cd87bc879fc8 - eb19a5089b56 tool_panel_section_id: animal_detection_on_acoustic_recordings tool_panel_section_label: Animal Detection on Acoustic Recordings diff --git a/usegalaxy.cz/annotation.yml.lock b/usegalaxy.cz/annotation.yml.lock index 5896a30..980e7c6 100644 --- a/usegalaxy.cz/annotation.yml.lock +++ b/usegalaxy.cz/annotation.yml.lock @@ -871,6 +871,7 @@ tools: owner: genouest revisions: - 7bc75dd0f782 + - a3586bccb95f - c2fc4ac35199 - cef77c1fe708 tool_panel_section_id: annotation diff --git a/usegalaxy.cz/assembly.yml.lock b/usegalaxy.cz/assembly.yml.lock index 8316a0a..0d7ad89 100644 --- a/usegalaxy.cz/assembly.yml.lock +++ b/usegalaxy.cz/assembly.yml.lock @@ -549,6 +549,7 @@ tools: owner: ecology revisions: - 0ccbe1c20fc3 + - 3d7fff9f7376 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: cactus_export diff --git a/usegalaxy.cz/biodiversity_data_exploration.yml.lock b/usegalaxy.cz/biodiversity_data_exploration.yml.lock index fdbfade..62d20bb 100644 --- a/usegalaxy.cz/biodiversity_data_exploration.yml.lock +++ b/usegalaxy.cz/biodiversity_data_exploration.yml.lock @@ -6,17 +6,20 @@ tools: owner: ecology revisions: - 5b31641e6d30 + - 994b7e66ed1d tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration - name: tool_anonymization owner: ecology revisions: - 726a387cfdc2 + - b5c1864c2989 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration - name: ecology_beta_diversity owner: ecology revisions: + - 55fb9b8f7a5f - fb7b2cbd80bb tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration @@ -24,11 +27,13 @@ tools: owner: ecology revisions: - 3df8937fd6fd + - c7e28d7d6607 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration - name: ecology_link_between_var owner: ecology revisions: + - 0eb0be089223 - 8e8867bf491a tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration @@ -36,11 +41,13 @@ tools: owner: ecology revisions: - 4ed07d2d442b + - d466edccbc60 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration - name: ecology_stat_presence_abs owner: ecology revisions: + - 10e44c159413 - 9a2e0195bb43 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration @@ -48,6 +55,7 @@ tools: owner: ecology revisions: - 4e7c1fb5e894 + - 7907660cb79b - dc187fe78055 tool_panel_section_id: biodiversity_data_exploration tool_panel_section_label: Biodiversity data exploration diff --git a/usegalaxy.cz/climate_analysis.yml.lock b/usegalaxy.cz/climate_analysis.yml.lock index e4f32d2..94ebe4e 100644 --- a/usegalaxy.cz/climate_analysis.yml.lock +++ b/usegalaxy.cz/climate_analysis.yml.lock @@ -87,5 +87,6 @@ tools: owner: ecology revisions: - 810820a0d45c + - bb4a73ff1462 tool_panel_section_id: climate_analysis tool_panel_section_label: Climate Analysis diff --git a/usegalaxy.cz/compute_indicators_for_satellite_remote_sensing.yml.lock b/usegalaxy.cz/compute_indicators_for_satellite_remote_sensing.yml.lock index 687cd40..f8a384f 100644 --- a/usegalaxy.cz/compute_indicators_for_satellite_remote_sensing.yml.lock +++ b/usegalaxy.cz/compute_indicators_for_satellite_remote_sensing.yml.lock @@ -6,29 +6,34 @@ tools: owner: ecology revisions: - 21e21363a8b4 + - 4e74d243b23e tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing - name: srs_diversity_maps owner: ecology revisions: + - 0c700b1d93a7 - 9adccd3da70c tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing - name: srs_preprocess_s2 owner: ecology revisions: + - 1357537d4b7f - 33a1e15f7252 tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing - name: srs_spectral_indices owner: ecology revisions: + - 76ff9a73cb01 - b40aba3d9e5c tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing - name: srs_process_data owner: ecology revisions: + - 77205c3b41a3 - cf69ad260611 tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing @@ -36,11 +41,13 @@ tools: owner: ecology revisions: - 5cae678042ec + - 6f812a4cf421 tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing - name: srs_metadata owner: ecology revisions: - 054b2522a933 + - 16d213e875c1 tool_panel_section_id: compute_indicators_for_satellite_remote_sensing tool_panel_section_label: Compute indicators for satellite remote sensing diff --git a/usegalaxy.cz/compute_indicators_for_turnover_boulders_fields.yml.lock b/usegalaxy.cz/compute_indicators_for_turnover_boulders_fields.yml.lock index 87a4643..aa32b11 100644 --- a/usegalaxy.cz/compute_indicators_for_turnover_boulders_fields.yml.lock +++ b/usegalaxy.cz/compute_indicators_for_turnover_boulders_fields.yml.lock @@ -5,6 +5,7 @@ tools: - name: cb_dissim owner: ecology revisions: + - 1459d4276876 - 8dc082da41c1 tool_panel_section_id: compute_indicators_for_turnover_boulders_fields tool_panel_section_label: Compute indicators for turnover boulders fields @@ -12,5 +13,6 @@ tools: owner: ecology revisions: - bcbad4f83dec + - e3d06be7861b tool_panel_section_id: compute_indicators_for_turnover_boulders_fields tool_panel_section_label: Compute indicators for turnover boulders fields diff --git a/usegalaxy.cz/convert_formats.yml.lock b/usegalaxy.cz/convert_formats.yml.lock index a82f758..ab25bfd 100644 --- a/usegalaxy.cz/convert_formats.yml.lock +++ b/usegalaxy.cz/convert_formats.yml.lock @@ -285,6 +285,7 @@ tools: owner: ecology revisions: - 307518fb51af + - c835cdc2072a tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: compress_file @@ -297,6 +298,7 @@ tools: owner: ecology revisions: - 4a9ac1df3278 + - f774a93f3d5a tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: tooldistillator diff --git a/usegalaxy.cz/data_and_metadata_management.yml.lock b/usegalaxy.cz/data_and_metadata_management.yml.lock index 35b9c60..d6bafe3 100644 --- a/usegalaxy.cz/data_and_metadata_management.yml.lock +++ b/usegalaxy.cz/data_and_metadata_management.yml.lock @@ -5,6 +5,7 @@ tools: - name: makeeml owner: ecology revisions: + - 0d6ae3833bdf - 13cfbeff9922 - 642e31c435c9 - d6aa2a899877 @@ -16,5 +17,6 @@ tools: - 57b8600443f5 - 5835a8d0dffc - c1d2c0922362 + - eaa1381cc7c8 tool_panel_section_id: data_and_metadata_management tool_panel_section_label: Data and Metadata Management diff --git a/usegalaxy.cz/ecoregionalization.yml.lock b/usegalaxy.cz/ecoregionalization.yml.lock index 9bf486f..a153bde 100644 --- a/usegalaxy.cz/ecoregionalization.yml.lock +++ b/usegalaxy.cz/ecoregionalization.yml.lock @@ -6,6 +6,7 @@ tools: owner: ecology revisions: - 74e966baa5fd + - 76106f275866 - 893b2b010d4a - c1d03f1a2e80 - cc9ea890823c @@ -17,6 +18,7 @@ tools: - 3cc4b8bbce00 - 694738eda0dc - aba980404954 + - c369c8ca4de6 - dcc059f387b6 tool_panel_section_id: ecoregionalization tool_panel_section_label: Ecoregionalization @@ -26,6 +28,7 @@ tools: - 45784ebada45 - 57c618532ac1 - 876a70f08281 + - ac2e1f0d5eac - c2856067ee72 tool_panel_section_id: ecoregionalization tool_panel_section_label: Ecoregionalization @@ -36,6 +39,7 @@ tools: - 6c5404468d8c - 8307fa98be22 - cf7aefee9977 + - d1873a180fc3 tool_panel_section_id: ecoregionalization tool_panel_section_label: Ecoregionalization - name: ecoregion_taxa_seeker @@ -44,6 +48,7 @@ tools: - 14bad9452425 - 2152f424e7a2 - 68d98dbd8bfc + - 9675dd48321a - cec1f7495897 tool_panel_section_id: ecoregionalization tool_panel_section_label: Ecoregionalization diff --git a/usegalaxy.cz/genome_editing.yml.lock b/usegalaxy.cz/genome_editing.yml.lock index 9275050..946853c 100644 --- a/usegalaxy.cz/genome_editing.yml.lock +++ b/usegalaxy.cz/genome_editing.yml.lock @@ -55,6 +55,7 @@ tools: owner: iuc revisions: - 6f3df153a095 + - 8a4f743c8d3e - 8c1bba8d544a tool_panel_section_id: genome_editing tool_panel_section_label: Genome editing diff --git a/usegalaxy.cz/get_data.yml.lock b/usegalaxy.cz/get_data.yml.lock index 5df73a9..ca8d67d 100644 --- a/usegalaxy.cz/get_data.yml.lock +++ b/usegalaxy.cz/get_data.yml.lock @@ -5,6 +5,7 @@ tools: - name: spocc_occ owner: ecology revisions: + - 4546864dbc34 - f64b3c1a80a6 - f9d76a46799a tool_panel_section_id: get_data diff --git a/usegalaxy.cz/gis_data_handling.yml.lock b/usegalaxy.cz/gis_data_handling.yml.lock index c3cf759..0c0a5f3 100644 --- a/usegalaxy.cz/gis_data_handling.yml.lock +++ b/usegalaxy.cz/gis_data_handling.yml.lock @@ -6,6 +6,7 @@ tools: owner: ecology revisions: - 00de53d18b99 + - 56f57ddccbd3 - 9bbaab36a5d4 - e8650cdf092f tool_panel_section_id: gis_data_handling @@ -13,6 +14,7 @@ tools: - name: xarray_select owner: ecology revisions: + - 3f70e5512e1d - 6baac361495b - b393815e4cb7 tool_panel_section_id: gis_data_handling @@ -21,29 +23,34 @@ tools: owner: ecology revisions: - 24696f52a90a + - 75fe8153d775 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_ogr2ogr owner: ecology revisions: + - dc4f997604b8 - e12db3b4d3a6 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_gdalwarp owner: ecology revisions: + - e934b268add8 - fd5594c05fab tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_gdal_translate owner: ecology revisions: + - 266c5a7d3b21 - 50d3ee48d983 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_gdal_merge owner: ecology revisions: + - 13c2f7b9e201 - 4285576f0690 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling @@ -51,29 +58,34 @@ tools: owner: ecology revisions: - 913cab85ce1e + - f7966270ef12 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_gdalbuildvrt owner: ecology revisions: + - a9fb43f1515d - b6152f24b94d tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: gdal_gdaladdo owner: ecology revisions: + - 71f851f99bb9 - c46b8322a8ee tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: xarray_netcdf2netcdf owner: ecology revisions: + - 38f1d26ad8e5 - c91c27b63fb2 tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling - name: xarray_mapplot owner: ecology revisions: + - 0a7399e79df6 - 506b6d6880ff tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling @@ -81,5 +93,6 @@ tools: owner: ecology revisions: - 663e6f115a76 + - 762f32ce768d tool_panel_section_id: gis_data_handling tool_panel_section_label: GIS Data Handling diff --git a/usegalaxy.cz/metagenomic_analysis.yml.lock b/usegalaxy.cz/metagenomic_analysis.yml.lock index 19f4f1f..fe75a75 100644 --- a/usegalaxy.cz/metagenomic_analysis.yml.lock +++ b/usegalaxy.cz/metagenomic_analysis.yml.lock @@ -485,6 +485,7 @@ tools: - name: vegan_diversity owner: iuc revisions: + - 7a3dbbe68c1a - a1b80a746054 - a2c047a2c380 tool_panel_section_id: metagenomic_analysis @@ -493,12 +494,14 @@ tools: owner: iuc revisions: - 0148e5cf20b2 + - 9e3206d6c148 - f9966e11885b tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: vegan_rarefaction owner: iuc revisions: + - 2e07478654b3 - af1211ed6c8e - b0d5976540e3 tool_panel_section_id: metagenomic_analysis @@ -703,6 +706,7 @@ tools: revisions: - 1d660ee0b1c8 - 869256447e86 + - dfcf92c27625 - e620f6e2b6a8 - eb7baf1f72ca tool_panel_section_id: metagenomic_analysis @@ -912,6 +916,7 @@ tools: owner: iuc revisions: - 2db2dc0eca8c + - 2ef21eba2d01 - 612df2a5054f - 613ee22af97c - 824497684a1f diff --git a/usegalaxy.cz/nanopore.yml.lock b/usegalaxy.cz/nanopore.yml.lock index 7bfe994..5bb84c2 100644 --- a/usegalaxy.cz/nanopore.yml.lock +++ b/usegalaxy.cz/nanopore.yml.lock @@ -65,6 +65,7 @@ tools: - 2a9afed42353 - 3d8c0b287c51 - 640e4eeab4e2 + - 8de9d54f7a96 - 90818f7835f3 - 9eab750c367d - a02b8b3f5a0c diff --git a/usegalaxy.cz/species_abundance.yml.lock b/usegalaxy.cz/species_abundance.yml.lock index f6be79f..d8a06c5 100644 --- a/usegalaxy.cz/species_abundance.yml.lock +++ b/usegalaxy.cz/species_abundance.yml.lock @@ -5,6 +5,7 @@ tools: - name: pampa_glmsp owner: ecology revisions: + - 532e9dad073f - 7a69e1c8ba46 - e972fe2bffee tool_panel_section_id: species_abundance @@ -14,6 +15,7 @@ tools: revisions: - 97967fbcf6da - b40fecef616b + - fe1677da339e tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: stoc_trend_indic @@ -21,11 +23,13 @@ tools: revisions: - 5c244408661f - 916b49d725ba + - c4080ecebc6d tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: stoc_mainglm_group owner: ecology revisions: + - 37ff02023213 - 8f953c35c787 - e3e173ae01b0 tool_panel_section_id: species_abundance @@ -33,6 +37,7 @@ tools: - name: stoc_mainglm owner: ecology revisions: + - 8bea8b6b7276 - a961be0a964f - df3ce23d0d23 tool_panel_section_id: species_abundance @@ -41,6 +46,7 @@ tools: owner: ecology revisions: - 2e45ae3b297a + - e3b8c5317668 - fd0687e91bf6 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance @@ -48,6 +54,7 @@ tools: owner: ecology revisions: - 22a784d2b0e0 + - 8e07083ecf68 - af4987066235 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance @@ -55,12 +62,14 @@ tools: owner: ecology revisions: - 00de53d18b99 + - 56f57ddccbd3 - e8650cdf092f tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: xarray_select owner: ecology revisions: + - 3f70e5512e1d - 6baac361495b - b393815e4cb7 tool_panel_section_id: species_abundance @@ -69,6 +78,7 @@ tools: owner: ecology revisions: - 5873ac1a5a44 + - 97767ca44eb0 - c67ece97d4b1 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance @@ -76,12 +86,14 @@ tools: owner: ecology revisions: - 1ebb70b59037 + - ce7dfdbe3301 - f1bfdeb5ebfe tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: pampa_plotglm owner: ecology revisions: + - bd78c446fb96 - c448e026f122 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance @@ -89,29 +101,34 @@ tools: owner: ecology revisions: - a79f5f0f17ad + - e3e656f24d47 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: regionalgam_flight_curve owner: ecology revisions: + - 565f4aac2049 - fff507f00b2b tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: regionalgam_autocor_acf owner: ecology revisions: + - 9969ded9090b - b416a363a2d5 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: regionalgam_glmmpql owner: ecology revisions: + - ca708716504c - f3e1b6d244a6 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: regionalgam_gls_adjusted owner: ecology revisions: + - c9cbc9075f36 - e2bff90af491 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance @@ -119,11 +136,13 @@ tools: owner: ecology revisions: - 58ecd15e6836 + - 81a94130ee76 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance - name: regionalgam_ab_index owner: ecology revisions: + - 11babbc06da0 - d0ee713d4758 tool_panel_section_id: species_abundance tool_panel_section_label: Species abundance diff --git a/usegalaxy.cz/variant_calling.yml.lock b/usegalaxy.cz/variant_calling.yml.lock index fccfd42..60ba962 100644 --- a/usegalaxy.cz/variant_calling.yml.lock +++ b/usegalaxy.cz/variant_calling.yml.lock @@ -69,6 +69,7 @@ tools: owner: iuc revisions: - 7ca2fba4be83 + - ab62d6d0d7b8 - b1ca9fce4749 - fe8bc8d1e7f5 tool_panel_section_id: variant_calling @@ -932,6 +933,7 @@ tools: - c91e09b60325 - cf3f306bce1b - fdbd97ff825e + - ffb42698e28f tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: breseq