Name		Name	Last commit message	Last commit date
Harvard-Oxford Masks		Harvard-Oxford Masks
NIfTI_20140122		NIfTI_20140122
SpectralClustering		SpectralClustering
Yeo_JNeurophysiol11_MNI152		Yeo_JNeurophysiol11_MNI152
code		code
7NetworkLiberalMasks.mat		7NetworkLiberalMasks.mat
7NetworkTightMasks.mat		7NetworkTightMasks.mat
EntropyCalcHOW_TO.txt		EntropyCalcHOW_TO.txt
EntropyCalcHOW_TO2.txt		EntropyCalcHOW_TO2.txt
README.md		README.md
SampEn.m		SampEn.m
SampEnScript.m		SampEnScript.m
allImages.mat		allImages.mat
anovaNetPrep.asv		anovaNetPrep.asv
anovaNetPrep.m		anovaNetPrep.m
clusterArrange.m		clusterArrange.m
cortCC.m		cortCC.m
cortSubCC.m		cortSubCC.m
displayCortCCMaps.m		displayCortCCMaps.m
displayCortSubCCMaps.m		displayCortSubCCMaps.m
displayEntropyScan.m		displayEntropyScan.m
entropyAverages.m		entropyAverages.m
entropyCalc.m		entropyCalc.m
flattenEntrop.m		flattenEntrop.m
imFlat.m		imFlat.m
intensityAverages.m		intensityAverages.m
isolateRois.m		isolateRois.m
linearizeScans.m		linearizeScans.m
lumpsubCortPairedTTest.m		lumpsubCortPairedTTest.m
maskSep.m		maskSep.m
meanCC.m		meanCC.m
meanImage.m		meanImage.m
meanMasksNetworks.m		meanMasksNetworks.m
networkCC.m		networkCC.m
networkPairedTTest.m		networkPairedTTest.m
pairedT_en.m		pairedT_en.m
plotReArrangedCC.m		plotReArrangedCC.m
restCellArr.m		restCellArr.m
roiBoxPlot.m		roiBoxPlot.m
sepNet.m		sepNet.m
separateROIs.m		separateROIs.m
subCortPairedTTest.m		subCortPairedTTest.m
subScans.m		subScans.m
ttestMaskRight.mat		ttestMaskRight.mat
wholeBrainPairedTTest.m		wholeBrainPairedTTest.m

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sampleEntropy

All functions and files used in the following repo (along with many command line inputs) were used in the Sample Entropy Project.

Primarily written by Hisham Temmar, although the NIFTI toolbox and Atlases were obtained externally.

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