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Extend BridgeDb metabolite ID coverage and add compound-name lookup#184
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Co-authored-by: hechth <12066490+hechth@users.noreply.github.com>
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[WIP] Add additional conversion functions from BridgeDb for web converter
Extend BridgeDb metabolite ID coverage and add compound-name lookup
Aug 25, 2026
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@copilot mark the test checking for availability of the CIR service with xfail and skip other tests using the service in case it is not available |
Co-authored-by: hechth <12066490+hechth@users.noreply.github.com>
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Implemented in commit cb25284. |
hechth
marked this pull request as ready for review
August 25, 2026 14:02
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@copilot, please add LIPID MAPS. |
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BridgeDb support in the web converter was limited to a subset of metabolite identifiers and lacked name-based lookup. This update expands BridgeDb conversions for MS-relevant identifiers and enables identifier retrieval from compound names via BridgeDb search.
Conversion surface expansion
casno(Ca)inchikey(Ik)from_casno()from_inchikey()BridgeDb name search support
BridgeDbSearchendpoint (/Human/search/).from_name()to supportcompound_name -> <BridgeDb identifiers>conversions via BridgeDb search.Response parsing robustness
PubChem-compoundandCpc), preventing dropped mappings when response format varies.