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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    259 438

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 213 93

  3. dragonstar2019 dragonstar2019 Public

    136 93

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 118 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 104 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 96 57

Repositories

Showing 10 of 108 repositories
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH's past year of commit activity
    Python 25 MIT 2 7 0 Updated Sep 3, 2026
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR's past year of commit activity
    259 438 136 0 Updated Sep 1, 2026
  • FaceKit Public
    WGLab/FaceKit's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 1, 2026
  • PipeVar Public

    Pipeline to call phenotype variant

    WGLab/PipeVar's past year of commit activity
    Nextflow 0 0 0 0 Updated Sep 1, 2026
  • PubMind Public

    PubMind is a large language model (LLM)-assisted framework for Publication Mutation and information Discovery, designed to extract variant–disease–pathogenicity relationships directly from biomedical literature.

    WGLab/PubMind's past year of commit activity
    Jupyter Notebook 15 3 1 0 Updated Aug 24, 2026
  • RareMind Public
    WGLab/RareMind's past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 21, 2026
  • PhenoGPT2 Public

    PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

    WGLab/PhenoGPT2's past year of commit activity
    Python 8 MIT 1 1 0 Updated Aug 21, 2026
  • LongAllele Public

    Joint inference of haplotypes and allele-specific expression from long-read bulk and single-cell RNA-seq

    WGLab/LongAllele's past year of commit activity
    Python 4 MIT 0 0 0 Updated Aug 20, 2026
  • REPAIR Public

    REPAIR: Reranking via Pairwise Residual Correction for Long-Tailed Classification

    WGLab/REPAIR's past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 13, 2026
  • ContextSV Public

    A long-read, whole-genome structural variant (SV) caller with copy number predictions

    WGLab/ContextSV's past year of commit activity
    C++ 2 MIT 0 5 0 Updated Aug 11, 2026
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