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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 933 183

  3. aisdk aisdk Public

    🤖 A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    Rust 31 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 140 repositories
  • ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    YuLab-SMU/ggtree's past year of commit activity
    R 933 183 173 1 Updated Sep 14, 2026
  • scMSGNN Public

    Multi-Scale Graph Neural Network for Single Cell Analysis

    YuLab-SMU/scMSGNN's past year of commit activity
    R 0 1 0 0 Updated Sep 14, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Sep 13, 2026
  • treedata-book-2ed Public

    📖 Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed's past year of commit activity
    HTML 0 1 0 0 Updated Sep 13, 2026
  • mechgraph Public
    YuLab-SMU/mechgraph's past year of commit activity
    R 0 0 0 0 Updated Sep 11, 2026
  • icare Public

    Intelligent ClinlAbomics Research Expedition

    YuLab-SMU/icare's past year of commit activity
    R 2 2 0 0 Updated Sep 10, 2026
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc's past year of commit activity
    R 51 12 0 0 Updated Sep 10, 2026
  • epiSeeker Public

    epiSeeker: an R package for Annotation, Comparison and Visualization of multi-omics epigenetic data

    YuLab-SMU/epiSeeker's past year of commit activity
    R 0 2 0 0 Updated Sep 8, 2026
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker's past year of commit activity
    R 258 78 116 0 Updated Sep 8, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 5 0 Updated Sep 7, 2026