Add entries for ebi-gxa anndata_ops and scanpy - #48
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cat-bro wants to merge 1 commit into
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@pavanvidem ping |
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I don't have much experience with ebi-gxa tool suite except that I used some from training materials. Maybe @pcm32 has a better understanding. |
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Input size is on which units? |
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GB |
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I suspect then that the multipliers might be too big and very quickly leave you with no choice of node to run. I had some memory usage stats that I left as supplementary material in a paper, let me try to dig that. In our pipeline, for AnnDatas of around 5 GB you rarely need more than 20 GBs of ram. |
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Add scaling rules for some ebi-gxa tools.
Add a general fallback for ebi-gxa/scanpy* as well as specific ones for anndata_ops, scanpy_multiplet_scrublet, scanpy_scale_data and scanpy_run_pca.