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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 135

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 171

Repositories

Showing 10 of 104 repositories
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles's past year of commit activity
    Python 4 9 7 3 Updated Sep 16, 2026
  • forecasts-flu Public

    Seasonal influenza variant growth rates and frequency forecasts

    nextstrain/forecasts-flu's past year of commit activity
    Python 1 MIT 0 11 3 Updated Sep 16, 2026
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 135 230 (1 issue needs help) 38 Updated Sep 15, 2026
  • infra Public

    Nextstrain shared infrastructure

    nextstrain/infra's past year of commit activity
    Makefile 0 0 2 0 Updated Sep 15, 2026
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data's past year of commit activity
    Python 47 43 11 18 Updated Sep 15, 2026
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox's past year of commit activity
    Python 50 MIT 22 19 8 Updated Sep 14, 2026
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org's past year of commit activity
    JavaScript 96 AGPL-3.0 56 70 13 Updated Sep 14, 2026
  • auspice.us Public
    nextstrain/auspice.us's past year of commit activity
    JavaScript 13 8 4 0 Updated Sep 13, 2026
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu's past year of commit activity
    Python 64 34 27 9 Updated Sep 10, 2026
  • status Public

    Nextstrain status pages

    nextstrain/status's past year of commit activity
    JavaScript 1 MIT 1 4 0 Updated Sep 10, 2026
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