Skip to content

Replace method_ids with methods/metrics include and exclude - #20

Merged
rcannood merged 3 commits into
mainfrom
feat/methods-include-exclude
Aug 18, 2026
Merged

Replace method_ids with methods/metrics include and exclude#20
rcannood merged 3 commits into
mainfrom
feat/methods-include-exclude

Conversation

@rcannood

Copy link
Copy Markdown
Member

Describe your changes

Replaces the outdated --method_ids argument in the run_benchmark workflow with the --methods_include / --methods_exclude arguments used by current task repos, using checkItemAllowed() from common/nextflow_helpers/helper.nf.

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@rcannood

Copy link
Copy Markdown
Member Author

Added --metrics_include / --metrics_exclude as well, same mechanism.

@rcannood
rcannood force-pushed the feat/methods-include-exclude branch from b6ff423 to dc657fd Compare August 18, 2026 09:58
@rcannood rcannood changed the title Replace method_ids with methods_include/exclude Replace method_ids with methods/metrics include and exclude Aug 18, 2026
@rcannood
rcannood merged commit 7c9de07 into main Aug 18, 2026
2 checks passed
@rcannood
rcannood deleted the feat/methods-include-exclude branch August 18, 2026 10:05
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant