Spatial Single-Cell Atlas Reveals KSHV-Driven Broad Cellular Reprogramming, Progenitor Expansion, Immune and Vascular Remodeling in Kaposi's Sarcoma
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Jun 22, 2026 - Jupyter Notebook
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spatial-transcriptomics-analyses
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Codes associated to the analyses performed in Dauyey Velds et al., "A spatial single-cell transcriptomic atlas of metastatic breast cancer progression".
breast-cancer spatial-transcriptomics xenium metastatic-breast-cancer spatial-transcriptomics-analyses
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Mar 20, 2026 - R
R scripts for preprocessing, pathway scoring, Bayesian modeling, and Cox proportional hazards analyses applied to the SCAPeSCLC dataset, integrating GeoMx Cancer Transcriptome Atlas expression and survival outcomes in ES-SCLC patients treated with chemo-immunotherapy.
bioinformatics bioinformatics-pipeline survival-analysis lung-cancer bayesian-inference transcriptomics bayesian-statistics oncology-data lung-cancer-classification spatial-transcriptomics transcriptomics-datasets transcriptomics-data-integration transcriptomics-data cancer-transcriptome-profiles lung-cancer-survivability proportional-hazards lung-cancer-data-set cancer-transcriptomics spatial-transcriptome spatial-transcriptomics-analyses
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Aug 8, 2026 - R
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