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metadata updates - #442

Merged
petrelharp merged 2 commits into
tskit-dev:mainfrom
petrelharp:mut_metadata
Aug 31, 2026
Merged

metadata updates#442
petrelharp merged 2 commits into
tskit-dev:mainfrom
petrelharp:mut_metadata

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@petrelharp

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Now:

  • mutations use metadata once again
  • individuals no longer have a flags

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codecov-commenter commented Aug 31, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.69%. Comparing base (dc0a360) to head (5bd358d).
⚠️ Report is 3 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #442      +/-   ##
==========================================
+ Coverage   96.57%   96.69%   +0.12%     
==========================================
  Files           8        8              
  Lines         904      909       +5     
  Branches      181      179       -2     
==========================================
+ Hits          873      879       +6     
  Misses         18       18              
+ Partials       13       12       -1     
Flag Coverage Δ
python-tests 96.69% <100.00%> (+0.12%) ⬆️

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… state to metadata

use dev version of msprime

move to SLiMv6MutationModel
@petrelharp

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Windows tests are failing; I'm merging and dealing with that later.

@petrelharp
petrelharp merged commit 44c0a96 into tskit-dev:main Aug 31, 2026
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2 participants